Simplify template.

* Remove glossary.
 * Move basic thesis information into main file.
 * Move contents of settings/* into single file.
 * Move bibliography file.

settings.tex

@@ -0,0 +1,49 @@
+\PassOptionsToPackage{table,svgnames,dvipsnames}{xcolor}
+
+\usepackage[utf8]{inputenc}
+\usepackage[T1]{fontenc}
+\usepackage[sc]{mathpazo}
+\usepackage[american]{babel}
+\usepackage[autostyle]{csquotes}
+\usepackage[%
+  backend=biber,
+  url=false,
+  style=alphabetic,
+  maxnames=4,
+  minnames=3,
+  maxbibnames=99,
+  firstinits,
+  uniquename=init]{biblatex} % TODO: adapt citation style
+\usepackage{graphicx}
+\usepackage{scrhack} % necessary for listings package
+\usepackage{listings}
+\usepackage{lstautogobble}
+\usepackage{tikz}
+\usepackage{pgfplots}
+\usepackage{pgfplotstable}
+\usepackage{booktabs}
+\usepackage[final]{microtype}
+\usepackage{caption}
+\usepackage[hidelinks]{hyperref} % hidelinks removes colored boxes around references and links
+
+
+\bibliography{bibliography}
+
+\setkomafont{disposition}{\normalfont\bfseries} % use serif font for headings
+\linespread{1.05} % adjust line spread for mathpazo font
+
+% Settings for pgfplots
+\pgfplotsset{compat=1.9} % TODO: adjust to your installed version
+\pgfplotsset{
+  % For available color names, see http://www.latextemplates.com/svgnames-colors
+  cycle list={CornflowerBlue\\Dandelion\\ForestGreen\\BrickRed\\},
+}
+
+% Settings for lstlistings
+\lstset{%
+  basicstyle=\ttfamily,
+  columns=fullflexible,
+  autogobble,
+  keywordstyle=\bfseries\color{MediumBlue},
+  stringstyle=\color{DarkGreen}
+}